Detailed information of SNP:
|
SNP ID:
sf0805644289(Gbrowse)
Chromosome: chr08 Position: 5644289 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 66.43% | 33.57% |
| All Indica | 765 | 55.69% | 44.31% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 356 | 46.63% | 53.37% |
| Indica II | 207 | 76.81% | 23.19% |
| Indica Intermediate | 202 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805644289 | G->A | INTERGENIC | None |