Detailed information of SNP:
|
SNP ID:
sf0805652727(Gbrowse)
Chromosome: chr08 Position: 5652727 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 79.84% | 20.16% |
| All Indica | 799 | 69.09% | 30.91% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 56.80% | 43.20% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805652727 | G->C | LOC_Os08g09780(LOC_Os08g09780.1) | Non-Synonymous SNP |
| sf0805652727 | G->C | LOC_Os08g09780(LOC_Os08g09780.2) | Non-Synonymous SNP |