Detailed information of SNP:
|
SNP ID:
sf0805660211(Gbrowse)
Chromosome: chr08 Position: 5660211 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 98.04% | 1.96% |
| All Indica | 785 | 100.00% | 0.00% |
| All Japonica | 480 | 94.38% | 5.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 100.00% | 0.00% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 77 | 98.70% | 1.30% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 5 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805660211 | G->C | LOC_Os08g09790(LOC_Os08g09790.1) | INTRON |