Detailed information of SNP:
|
SNP ID:
sf0805683704(Gbrowse)
Chromosome: chr08 Position: 5683704 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.14% | 46.86% |
| All Indica | 799 | 81.60% | 18.40% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805683704 | T->G | LOC_Os08g09840(LOC_Os08g09840.1) | Non-Synonymous SNP |