Detailed information of SNP:
|
SNP ID:
sf0805684580(Gbrowse)
Chromosome: chr08 Position: 5684580 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 76.09% | 23.91% |
| All Indica | 799 | 67.83% | 32.17% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 56.00% | 44.00% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805684580 | C->A | LOC_Os08g09840(LOC_Os08g09840.1) | Synonymous |