Detailed information of SNP:
|
SNP ID:
sf0805693240(Gbrowse)
Chromosome: chr08 Position: 5693240 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1311 | 80.63% | 19.37% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 392 | 37.76% | 62.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 252 | 40.87% | 59.13% |
| Tropical Japonica | 81 | 28.40% | 71.60% |
| Japonica Intermediate | 59 | 37.29% | 62.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805693240 | A->T | LOC_Os08g09860(LOC_Os08g09860.1) | INTRON |