Detailed information of SNP:
|
SNP ID:
sf0805694354(Gbrowse)
Chromosome: chr08 Position: 5694354 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 80.84% | 19.16% |
| All Indica | 792 | 72.73% | 27.27% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 33.33% | 66.67% |
| Indica I | 374 | 63.37% | 36.63% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 209 | 69.38% | 30.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805694354 | G->T | LOC_Os08g09860(LOC_Os08g09860.1) | INTRON |