Detailed information of SNP:
|
SNP ID:
sf0805697454(Gbrowse)
Chromosome: chr08 Position: 5697454 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 77.97% | 22.03% |
| All Indica | 795 | 68.93% | 31.07% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 21.54% | 78.46% |
| Indica I | 372 | 55.91% | 44.09% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805697454 | C->T | LOC_Os08g09870(LOC_Os08g09870.1) | Non-Synonymous SNP |