Detailed information of SNP:
|
SNP ID:
sf0805723091(Gbrowse)
Chromosome: chr08 Position: 5723091 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 51.02% | 48.98% |
| All Indica | 799 | 80.98% | 19.02% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805723091 | A->G | INTERGENIC | None |