Detailed information of SNP:
|
SNP ID:
sf0805760729(Gbrowse)
Chromosome: chr08 Position: 5760729 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 51.30% | 48.70% |
| All Indica | 799 | 81.35% | 18.65% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805760729 | G->A | LOC_Os08g09970(LOC_Os08g09970.1) | Non-Synonymous SNP |