Detailed information of SNP:
|
SNP ID:
sf0805789432(Gbrowse)
Chromosome: chr08 Position: 5789432 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 69.69% | 30.31% |
| All Indica | 798 | 58.77% | 41.23% |
| All Japonica | 491 | 93.89% | 6.11% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 45.60% | 54.40% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 210 | 55.71% | 44.29% |
| Temperate Japonica | 332 | 98.19% | 1.81% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805789432 | C->T | INTERGENIC | None |