Detailed information of SNP:
|
SNP ID:
sf0805789579(Gbrowse)
Chromosome: chr08 Position: 5789579 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 71.31% | 28.69% |
| All Indica | 799 | 54.57% | 45.43% |
| All Japonica | 494 | 93.32% | 6.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 333 | 96.10% | 3.90% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805789579 | G->A | INTERGENIC | None |