Detailed information of SNP:
|
SNP ID:
sf0805825842(Gbrowse)
Chromosome: chr08 Position: 5825842 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1309 | 90.45% | 9.55% |
| All Indica | 693 | 83.55% | 16.45% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 317 | 80.76% | 19.24% |
| Indica II | 191 | 88.48% | 11.52% |
| Indica Intermediate | 185 | 83.24% | 16.76% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805825842 | A->G | LOC_Os08g10050(LOC_Os08g10050.1) | Non-Synonymous SNP |