Detailed information of SNP:
|
SNP ID:
sf0805871879(Gbrowse)
Chromosome: chr08 Position: 5871879 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 52.25% | 47.75% |
| All Indica | 772 | 26.30% | 73.70% |
| All Japonica | 491 | 98.57% | 1.43% |
| Aus | 63 | 12.70% | 87.30% |
| Indica I | 363 | 33.61% | 66.39% |
| Indica II | 210 | 15.24% | 84.76% |
| Indica Intermediate | 199 | 24.62% | 75.38% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805871879 | T->G | LOC_Os08g10120(LOC_Os08g10120.1) | INTRON |