Detailed information of SNP:
|
SNP ID:
sf0805872183(Gbrowse)
Chromosome: chr08 Position: 5872183 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1377 | 51.05% | 48.95% |
| All Indica | 762 | 79.40% | 20.60% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 353 | 75.64% | 24.36% |
| Indica II | 209 | 84.21% | 15.79% |
| Indica Intermediate | 200 | 81.00% | 19.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805872183 | T->C | LOC_Os08g10120(LOC_Os08g10120.1) | Non-Synonymous SNP |