Detailed information of SNP:
|
SNP ID:
sf0805894534(Gbrowse)
Chromosome: chr08 Position: 5894534 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1357 | 93.44% | 6.56% |
| All Indica | 743 | 89.37% | 10.63% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 344 | 92.15% | 7.85% |
| Indica II | 206 | 88.35% | 11.65% |
| Indica Intermediate | 193 | 85.49% | 14.51% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805894534 | A->G | LOC_Os08g10160(LOC_Os08g10160.1) | Synonymous |