Detailed information of SNP:
|
SNP ID:
sf0805898716(Gbrowse)
Chromosome: chr08 Position: 5898716 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 84.62% | 15.38% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 473 | 55.39% | 44.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 44.62% | 55.38% |
| Tropical Japonica | 89 | 84.27% | 15.73% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805898716 | A->G | LOC_Os08g10170(LOC_Os08g10170.1) | Synonymous |