Detailed information of SNP:
|
SNP ID:
sf0805900179(Gbrowse)
Chromosome: chr08 Position: 5900179 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 92.47% | 7.53% |
| All Indica | 765 | 87.19% | 12.81% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 362 | 82.87% | 17.13% |
| Indica II | 202 | 93.56% | 6.44% |
| Indica Intermediate | 201 | 88.56% | 11.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805900179 | G->T | INTERGENIC | None |