Detailed information of SNP:
|
SNP ID:
sf0805900668(Gbrowse)
Chromosome: chr08 Position: 5900668 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 94.67% | 5.33% |
| All Indica | 792 | 94.32% | 5.68% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 64 | 60.94% | 39.06% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 210 | 93.33% | 6.67% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805900668 | G->A | LOC_Os08g10180(LOC_Os08g10180.1) | INTRON |