Detailed information of SNP:
|
SNP ID:
sf0805901497(Gbrowse)
Chromosome: chr08 Position: 5901497 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 97.10% | 2.90% |
| All Indica | 793 | 95.33% | 4.67% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805901497 | T->C | LOC_Os08g10180(LOC_Os08g10180.1) | Non-Synonymous SNP |