Detailed information of SNP:
|
SNP ID:
sf0805902406(Gbrowse)
Chromosome: chr08 Position: 5902406 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 54.80% | 45.20% |
| All Indica | 761 | 28.78% | 71.22% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 63 | 23.81% | 76.19% |
| Indica I | 359 | 20.06% | 79.94% |
| Indica II | 208 | 48.08% | 51.92% |
| Indica Intermediate | 194 | 24.23% | 75.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805902406 | G->A | LOC_Os08g10180(LOC_Os08g10180.1) | Synonymous |