Detailed information of SNP:
|
SNP ID:
sf0805915769(Gbrowse)
Chromosome: chr08 Position: 5915769 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 51.19% | 48.81% |
| All Indica | 782 | 80.18% | 19.82% |
| All Japonica | 494 | 2.02% | 97.98% |
| Aus | 61 | 73.77% | 26.23% |
| Indica I | 367 | 76.57% | 23.43% |
| Indica II | 207 | 86.96% | 13.04% |
| Indica Intermediate | 208 | 79.81% | 20.19% |
| Temperate Japonica | 332 | 2.11% | 97.89% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805915769 | A->C | INTERGENIC | None |