Detailed information of SNP:
|
SNP ID:
sf0805935418(Gbrowse)
Chromosome: chr08 Position: 5935418 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 90.59% | 9.41% |
| All Indica | 795 | 91.70% | 8.30% |
| All Japonica | 496 | 89.72% | 10.28% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 91.62% | 8.38% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805935418 | T->C | INTERGENIC | None |