Detailed information of SNP:



SNP ID: sf0805935418(Gbrowse)

Chromosome: chr08

Position: 5935418
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1414 90.59% 9.41%
All Indica795 91.70% 8.30%
All Japonica496 89.72% 10.28%
Aus67 92.54% 7.46%
Indica I372 100.00% 0.00%
Indica II213 70.89% 29.11%
Indica Intermediate210 98.10% 1.90%
Temperate Japonica334 91.62% 8.38%
Tropical Japonica94 82.98% 17.02%
Japonica Intermediate68 89.71% 10.29%
Group VI/Aromatic14 35.71% 64.29%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0805935418 T->C INTERGENIC None