Detailed information of SNP:
|
SNP ID:
sf0805945033(Gbrowse)
Chromosome: chr08 Position: 5945033 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 97.86% | 2.14% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 480 | 93.75% | 6.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 324 | 99.69% | 0.31% |
| Tropical Japonica | 91 | 76.92% | 23.08% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805945033 | G->A | LOC_Os08g10244(LOC_Os08g10244.1) | INTRON |