Detailed information of SNP:
|
SNP ID:
sf0805946644(Gbrowse)
Chromosome: chr08 Position: 5946644 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 68.50% | 31.50% |
| All Indica | 788 | 58.88% | 41.12% |
| All Japonica | 490 | 84.29% | 15.71% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 368 | 79.89% | 20.11% |
| Indica II | 212 | 20.28% | 79.72% |
| Indica Intermediate | 208 | 61.06% | 38.94% |
| Temperate Japonica | 328 | 92.99% | 7.01% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805946644 | T->C | LOC_Os08g10244(LOC_Os08g10244.1) | UTR_5_PRIME |