Detailed information of SNP:
|
SNP ID:
sf0805957871(Gbrowse)
Chromosome: chr08 Position: 5957871 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 92.60% | 7.40% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 496 | 87.70% | 12.30% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805957871 | C->A | INTERGENIC | None |