Detailed information of SNP:
|
SNP ID:
sf0805958257(Gbrowse)
Chromosome: chr08 Position: 5958257 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 92.74% | 7.26% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 496 | 87.90% | 12.10% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805958257 | A->G | INTERGENIC | None |