Detailed information of SNP:
|
SNP ID:
sf0805958459(Gbrowse)
Chromosome: chr08 Position: 5958459 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 91.54% | 8.46% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 496 | 85.08% | 14.92% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 334 | 91.62% | 8.38% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805958459 | T->G | INTERGENIC | None |