Detailed information of SNP:
|
SNP ID:
sf0805962029(Gbrowse)
Chromosome: chr08 Position: 5962029 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 98.06% | 1.94% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 418 | 93.78% | 6.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 281 | 100.00% | 0.00% |
| Tropical Japonica | 79 | 72.15% | 27.85% |
| Japonica Intermediate | 58 | 93.10% | 6.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805962029 | G->A | INTERGENIC | None |