Detailed information of SNP:
|
SNP ID:
sf0805964690(Gbrowse)
Chromosome: chr08 Position: 5964690 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 70.18% | 29.82% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 494 | 18.02% | 81.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 8.38% | 91.62% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 66 | 19.70% | 80.30% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805964690 | G->A | LOC_Os08g10260(LOC_Os08g10260.1) | Non-Synonymous SNP |