Detailed information of SNP:
|
SNP ID:
sf0805966438(Gbrowse)
Chromosome: chr08 Position: 5966438 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 63.35% | 36.65% |
| All Indica | 799 | 41.80% | 58.20% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 41.60% | 58.40% |
| Indica II | 213 | 46.95% | 53.05% |
| Indica Intermediate | 211 | 36.97% | 63.03% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805966438 | T->C | LOC_Os08g10260(LOC_Os08g10260.1) | Non-Synonymous SNP |