Detailed information of SNP:
|
SNP ID:
sf0805967811(Gbrowse)
Chromosome: chr08 Position: 5967811 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1364 | 73.75% | 26.25% |
| All Indica | 751 | 99.20% | 0.80% |
| All Japonica | 492 | 28.86% | 71.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 166 | 96.99% | 3.01% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 25.75% | 74.25% |
| Tropical Japonica | 91 | 45.05% | 54.95% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805967811 | A->G | INTERGENIC | None |