Detailed information of SNP:
|
SNP ID:
sf0805968906(Gbrowse)
Chromosome: chr08 Position: 5968906 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 80.38% | 19.62% |
| All Indica | 794 | 66.12% | 33.88% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 63.54% | 36.46% |
| Indica II | 211 | 63.03% | 36.97% |
| Indica Intermediate | 210 | 73.81% | 26.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805968906 | G->A | INTERGENIC | None |