Detailed information of SNP:
|
SNP ID:
sf0805969835(Gbrowse)
Chromosome: chr08 Position: 5969835 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 69.69% | 30.31% |
| All Indica | 794 | 99.24% | 0.76% |
| All Japonica | 496 | 16.73% | 83.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 20.66% | 79.34% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805969835 | T->C | LOC_Os08g10270(LOC_Os08g10270.1) | INTRON |