Detailed information of SNP:
|
SNP ID:
sf0805969883(Gbrowse)
Chromosome: chr08 Position: 5969883 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 94.84% | 5.16% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 493 | 86.41% | 13.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 95.50% | 4.50% |
| Tropical Japonica | 92 | 47.83% | 52.17% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805969883 | T->C | LOC_Os08g10270(LOC_Os08g10270.1) | INTRON |