Detailed information of SNP:
|
SNP ID:
sf0805972373(Gbrowse)
Chromosome: chr08 Position: 5972373 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 59.83% | 40.17% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 494 | 3.24% | 96.76% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 333 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805972373 | G->A | LOC_Os08g10270(LOC_Os08g10270.1) | INTRON |