Detailed information of SNP:
|
SNP ID:
sf0805991746(Gbrowse)
Chromosome: chr08 Position: 5991746 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 96.95% | 3.05% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 457 | 91.68% | 8.32% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 308 | 97.08% | 2.92% |
| Tropical Japonica | 84 | 76.19% | 23.81% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0805991746 | C->T | INTERGENIC | None |