Detailed information of SNP:
|
SNP ID:
sf0806010715(Gbrowse)
Chromosome: chr08 Position: 6010715 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 83.36% | 16.64% |
| All Indica | 798 | 96.37% | 3.63% |
| All Japonica | 497 | 59.76% | 40.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 58.21% | 41.79% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806010715 | A->G | INTERGENIC | None |