Detailed information of SNP:
|
SNP ID:
sf0806057154(Gbrowse)
Chromosome: chr08 Position: 6057154 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 81.05% | 18.95% |
| All Indica | 770 | 99.61% | 0.39% |
| All Japonica | 496 | 48.59% | 51.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 99.72% | 0.28% |
| Indica II | 208 | 99.52% | 0.48% |
| Indica Intermediate | 206 | 99.51% | 0.49% |
| Temperate Japonica | 335 | 58.51% | 41.49% |
| Tropical Japonica | 93 | 22.58% | 77.42% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806057154 | G->A | LOC_Os08g10340(LOC_Os08g10340.1) | INTRON |