Detailed information of SNP:
|
SNP ID:
sf0806065081(Gbrowse)
Chromosome: chr08 Position: 6065081 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 96.46% | 3.54% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806065081 | T->C | INTERGENIC | None |