Detailed information of SNP:
|
SNP ID:
sf0806088264(Gbrowse)
Chromosome: chr08 Position: 6088264 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 86.38% | 13.62% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 495 | 62.22% | 37.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 58.68% | 41.32% |
| Tropical Japonica | 93 | 60.22% | 39.78% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806088264 | C->T | INTERGENIC | None |