Detailed information of SNP:
|
SNP ID:
sf0806097922(Gbrowse)
Chromosome: chr08 Position: 6097922 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1344 | 87.72% | 12.28% |
| All Indica | 725 | 77.38% | 22.62% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 330 | 63.03% | 36.97% |
| Indica II | 201 | 96.52% | 3.48% |
| Indica Intermediate | 194 | 81.96% | 18.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806097922 | G->A | LOC_Os08g10390(LOC_Os08g10390.1) | INTRON |