Detailed information of SNP:
|
SNP ID:
sf0806127107(Gbrowse)
Chromosome: chr08 Position: 6127107 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 94.56% | 5.44% |
| All Indica | 759 | 91.57% | 8.43% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 94.21% | 5.79% |
| Indica II | 202 | 90.59% | 9.41% |
| Indica Intermediate | 194 | 87.63% | 12.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806127107 | C->A | LOC_Os08g10430(LOC_Os08g10430.1) | UTR_5_PRIME |