Detailed information of SNP:
|
SNP ID:
sf0806149752(Gbrowse)
Chromosome: chr08 Position: 6149752 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 97.63% | 2.37% |
| All Indica | 774 | 96.64% | 3.36% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 361 | 96.12% | 3.88% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 202 | 97.03% | 2.97% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806149752 | C->T | LOC_Os08g10460(LOC_Os08g10460.1) | Synonymous |