Detailed information of SNP:
|
SNP ID:
sf0806233976(Gbrowse)
Chromosome: chr08 Position: 6233976 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 95.38% | 4.62% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 424 | 85.85% | 14.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 292 | 98.97% | 1.03% |
| Tropical Japonica | 70 | 47.14% | 52.86% |
| Japonica Intermediate | 62 | 67.74% | 32.26% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806233976 | G->A | INTERGENIC | None |