Detailed information of SNP:
|
SNP ID:
sf0806319149(Gbrowse)
Chromosome: chr08 Position: 6319149 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.74% | 7.26% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 80.28% | 19.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 75.22% | 24.78% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806319149 | G->A | LOC_Os08g10740(LOC_Os08g10740.2) | Non-Synonymous SNP |
| sf0806319149 | G->A | LOC_Os08g10740(LOC_Os08g10740.1) | Non-Synonymous SNP |