Detailed information of SNP:
|
SNP ID:
sf0806358114(Gbrowse)
Chromosome: chr08 Position: 6358114 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 93.71% | 6.29% |
| All Indica | 781 | 90.78% | 9.22% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 362 | 85.64% | 14.36% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 207 | 92.27% | 7.73% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806358114 | A->C | LOC_Os08g10800(LOC_Os08g10800.1) | INTRON |