Detailed information of SNP:
|
SNP ID:
sf0806427792(Gbrowse)
Chromosome: chr08 Position: 6427792 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 86.79% | 13.21% |
| All Indica | 750 | 76.53% | 23.47% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 70.89% | 29.11% |
| Indica II | 203 | 81.28% | 18.72% |
| Indica Intermediate | 200 | 81.50% | 18.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806427792 | A->G | INTERGENIC | None |