Detailed information of SNP:
|
SNP ID:
sf0806439456(Gbrowse)
Chromosome: chr08 Position: 6439456 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 56.47% | 43.53% |
| All Indica | 757 | 87.32% | 12.68% |
| All Japonica | 496 | 2.42% | 97.58% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 345 | 86.09% | 13.91% |
| Indica II | 207 | 87.92% | 12.08% |
| Indica Intermediate | 205 | 88.78% | 11.22% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806439456 | G->C | LOC_Os08g10930(LOC_Os08g10930.1) | INTRON |