Detailed information of SNP:
|
SNP ID:
sf0806494779(Gbrowse)
Chromosome: chr08 Position: 6494779 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1319 | 72.71% | 27.29% |
| All Indica | 726 | 58.13% | 41.87% |
| All Japonica | 475 | 98.53% | 1.47% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 326 | 66.87% | 33.13% |
| Indica II | 205 | 43.90% | 56.10% |
| Indica Intermediate | 195 | 58.46% | 41.54% |
| Temperate Japonica | 326 | 99.39% | 0.61% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 57 | 96.49% | 3.51% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0806494779 | G->A | LOC_Os08g11030(LOC_Os08g11030.1) | INTRON |